PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55964.9
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 137aa    MW: 15368.7 Da    PI: 10.0432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55964.9genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.3e-06651041554
                   HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +i +  ++L++llP+a   ++ ++  + +L++++ YI+sL
  MLOC_55964.9  65 QISDLVSKLQDLLPEARLRGNDRVPSSRVLQETCTYIRSL 104
                   789999*********8899*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-749123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.50250104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-864125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MRMTEVGEPK CFILASKSSL PPALHLLLFK ASSHLQRRCT SSMRLTQAPR SRSRQSGSSR  60
ITDEQISDLV SKLQDLLPEA RLRGNDRVPS SRVLQETCTY IRSLHREVDD LSERLSELLA  120
TSDMSSAQAA IIRSLLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0695692e-94AK069569.1 Oryza sativa Japonica Group cDNA clone:J023022K12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752667.18e-48PREDICTED: uncharacterized protein LOC100821441 isoform X2
RefseqXP_014752666.18e-48PREDICTED: uncharacterized protein LOC100821441 isoform X2
RefseqXP_014752664.18e-48PREDICTED: uncharacterized protein LOC100821441 isoform X2
RefseqXP_014752660.18e-48PREDICTED: uncharacterized protein LOC100821441 isoform X2
SwissprotB8APB53e-46ILI6_ORYSI; Transcription factor ILI6
SwissprotQ0DUR23e-46ILI6_ORYSJ; Transcription factor ILI6
TrEMBLM0X0366e-93M0X036_HORVD; Uncharacterized protein
STRINGBRADI1G73160.12e-44(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-33bHLH family protein